This afternoon, I found my site was not accessible when I tried it. So I went to the Webmin panel. It loaded, but with a warning, disk space is running out.
It is kind of urgent. All websites on this VPS have the problem, such as phpBB forum, etc.
OK. I ssh to the server. run the command as below.
davidyin@mail:~$ df -h --total Filesystem Size Used Avail Use% Mounted on tmpfs 794M 788K 793M 1% /run /dev/sda3 194G 94G 91G 52% / tmpfs 3.9G 288K 3.9G 1% /dev/shm tmpfs 5.0M 0 5.0M 0% /run/lock /dev/sda2 2.0G 332M 1.5G 18% /boot tmpfs 794M 0 794M 0% /run/user/1000 total 202G 95G 97G 50% -
There is a lot of disk space. Almost 50% is free. What is the problem?
I run another command to check the inodes.
davidyin@mail:~$ df -i Filesystem Inodes IUsed IFree IUse% Mounted on tmpfs 1015989 731 1015258 1% /run /dev/sda3 12976128 12956541 19587 100% / tmpfs 1015989 4 1015985 1% /dev/shm tmpfs 1015989 2 1015987 1% /run/lock /dev/sda2 131072 332 130740 1% /boot tmpfs 203197 18 203179 1% /run/user/1000
Now, I know the problem. The inode is full on the sda3.
What is an inode?
An inode is a file data structure that stores information about any Linux file except its name and data.
What are inodes used for?
Data is stored on your disk in the form of fixed-size blocks. If you save a file that exceeds a standard block, your computer will find the next available segment on which to store the rest of your file. Over time, that can get super confusing.
That’s where inodes come in. While they don’t contain any of the file’s actual data, it stores the file’s metadata, including all the storage blocks on which the file’s data can be found.
Information contained in an inode:
File size
Device on which the file is stored
User and group IDs associated with the file
Permissions needed to access the file
Creation, read, and write timestamps
Location of the data (though not the filepath)
Inodes are also independent of filenames. That means you can copy a single file, rename it, and still have it point to the same inode as the original.
Here is my situation. I have a lot of small files. Each file may be 1KB size. The disk space is not full, but the inodes are almost full.
I have to find the folder that holds these small files.
OK. I found it. It is the WordPress cache folder.
First I stop the Nginx Web service. Delete some files to give a space to run load the web server.
Second, I start the Nginx Web server, and log in to my blog(here) wp-admin page. Navigated to the W3 Total Cache plugin manage page, disable it.
Third, in SSH window, I removed all the files under myblog/wp-content/cache/.
After all these steps, it took me about three hours in step 3. I checked the inode and disk space again.
davidyin@mail:~$ df -h --total Filesystem Size Used Avail Use% Mounted on tmpfs 794M 800K 793M 1% /run /dev/sda3 194G 40G 145G 22% / tmpfs 3.9G 300K 3.9G 1% /dev/shm tmpfs 5.0M 0 5.0M 0% /run/lock /dev/sda2 2.0G 170M 1.7G 10% /boot tmpfs 794M 0 794M 0% /run/user/1000 total 202G 40G 152G 21% - davidyin@mail:~$ df -i Filesystem Inodes IUsed IFree IUse% Mounted on tmpfs 1015989 736 1015253 1% /run /dev/sda3 12976128 343001 12633127 3% / tmpfs 1015989 4 1015985 1% /dev/shm tmpfs 1015989 2 1015987 1% /run/lock /dev/sda2 131072 324 130748 1% /boot tmpfs 203197 18 203179 1% /run/user/1000
It freed about 54GB, 12613540 inodes. By calculation, about 4.49kb per file. They are all small cache files. You can check my blog’s speed. See if it is still good.
I check the W3 Total Cache page on the WordPress plugin directory. Some people have same issue just like me.
https://wordpress.org/support/topic/excessive-files-creation-issue/
